TreeMicInterV1, Main, Exploration, bibRecord, 000130

Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata.

Identifieur interne : 000130 ( Main/Exploration ); précédent : 000129; suivant : 000131

Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata.

Auteurs : Casper N. Kamutando [Afrique du Sud] ; Surendra Vikram [Afrique du Sud] ; Gilbert Kamgan-Nkuekam [Afrique du Sud] ; Thulani P. Makhalanyane [Afrique du Sud] ; Michelle Greve [Afrique du Sud] ; Johannes J Le Roux [Afrique du Sud] ; David M. Richardson [Afrique du Sud] ; Don Cowan [Afrique du Sud] ; Angel Valverde [Afrique du Sud]

Source :

Scientific reports [ 2045-2322 ] ; 2017.

RBID : pubmed:28747705

Descripteurs français

KwdFr :
- ADN bactérien (génétique), ADN fongique (génétique), ADN ribosomique (génétique), ARN ribosomique 16S (génétique), Acacia (croissance et développement), Analyse de séquence d'ADN (méthodes), Bactéries (classification), Bactéries (génétique), Bactéries (isolement et purification), Champignons (classification), Champignons (génétique), Champignons (isolement et purification), Espèce introduite (MeSH), Microbiologie du sol (MeSH), Microbiote (MeSH), Phylogenèse (MeSH), Protéines bactériennes (génétique), Protéines fongiques (génétique), Rhizosphère (MeSH), Régulation de l'expression des gènes bactériens (MeSH), Régulation de l'expression des gènes fongiques (MeSH), Sol (composition chimique), Séquençage nucléotidique à haut débit (méthodes).
MESH :
- composition chimique : Bactéries, Champignons, Sol.
- croissance et développement : Acacia.
- génétique : ADN bactérien, ADN fongique, ADN ribosomique, ARN ribosomique 16S, Bactéries, Champignons, Protéines bactériennes, Protéines fongiques.
- isolement et purification : Bactéries, Champignons.
- méthodes : Analyse de séquence d'ADN, Séquençage nucléotidique à haut débit.
- Espèce introduite, Microbiologie du sol, Microbiote, Phylogenèse, Rhizosphère, Régulation de l'expression des gènes bactériens, Régulation de l'expression des gènes fongiques.

English descriptors

KwdEn :
- Acacia (growth & development), Bacteria (classification), Bacteria (genetics), Bacteria (isolation & purification), Bacterial Proteins (genetics), DNA, Bacterial (genetics), DNA, Fungal (genetics), DNA, Ribosomal (genetics), Fungal Proteins (genetics), Fungi (classification), Fungi (genetics), Fungi (isolation & purification), Gene Expression Regulation, Bacterial (MeSH), Gene Expression Regulation, Fungal (MeSH), High-Throughput Nucleotide Sequencing (methods), Introduced Species (MeSH), Microbiota (MeSH), Phylogeny (MeSH), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Sequence Analysis, DNA (methods), Soil (chemistry), Soil Microbiology (MeSH).
MESH :
- chemical , chemistry : Soil.
- chemical , genetics : Bacterial Proteins, DNA, Bacterial, DNA, Fungal, DNA, Ribosomal, Fungal Proteins, RNA, Ribosomal, 16S.
- classification : Bacteria, Fungi.
- genetics : Bacteria, Fungi.
- growth & development : Acacia.
- isolation & purification : Bacteria, Fungi.
- methods : High-Throughput Nucleotide Sequencing, Sequence Analysis, DNA.
- Gene Expression Regulation, Bacterial, Gene Expression Regulation, Fungal, Introduced Species, Microbiota, Phylogeny, Rhizosphere, Soil Microbiology.

Abstract

Invasiveness and the impacts of introduced plants are known to be mediated by plant-microbe interactions. Yet, the microbial communities associated with invasive plants are generally poorly understood. Here we report on the first comprehensive investigation of the bacterial and fungal communities inhabiting the rhizosphere and the surrounding bulk soil of a widespread invasive tree, Acacia dealbata. Amplicon sequencing data indicated that rhizospheric microbial communities differed significantly in structure and composition from those of the bulk soil. Two bacterial (Alphaproteobacteria and Gammaproteobacteria) and two fungal (Pezizomycetes and Agaricomycetes) classes were enriched in the rhizosphere compared with bulk soils. Changes in nutritional status, possibly induced by A. dealbata, primarily shaped rhizosphere soil communities. Despite a high degree of geographic variability in the diversity and composition of microbial communities, invasive A. dealbata populations shared a core of bacterial and fungal taxa, some of which are known to be involved in N and P cycling, while others are regarded as plant pathogens. Shotgun metagenomic analysis also showed that several functional genes related to plant growth promotion were overrepresented in the rhizospheres of A. dealbata. Overall, results suggest that rhizosphere microbes may contribute to the widespread success of this invader in novel environments.

DOI: 10.1038/s41598-017-07018-w
PubMed: 28747705
PubMed Central: PMC5529528

Affiliations:

Afrique du Sud

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Le document en format XML

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<series><title level="j">Scientific reports</title>
<idno type="eISSN">2045-2322</idno>
<imprint><date when="2017" type="published">2017</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Acacia (growth & development)</term>
<term>Bacteria (classification)</term>
<term>Bacteria (genetics)</term>
<term>Bacteria (isolation & purification)</term>
<term>Bacterial Proteins (genetics)</term>
<term>DNA, Bacterial (genetics)</term>
<term>DNA, Fungal (genetics)</term>
<term>DNA, Ribosomal (genetics)</term>
<term>Fungal Proteins (genetics)</term>
<term>Fungi (classification)</term>
<term>Fungi (genetics)</term>
<term>Fungi (isolation & purification)</term>
<term>Gene Expression Regulation, Bacterial (MeSH)</term>
<term>Gene Expression Regulation, Fungal (MeSH)</term>
<term>High-Throughput Nucleotide Sequencing (methods)</term>
<term>Introduced Species (MeSH)</term>
<term>Microbiota (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rhizosphere (MeSH)</term>
<term>Sequence Analysis, DNA (methods)</term>
<term>Soil (chemistry)</term>
<term>Soil Microbiology (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term>
<term>ADN fongique (génétique)</term>
<term>ADN ribosomique (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acacia (croissance et développement)</term>
<term>Analyse de séquence d'ADN (méthodes)</term>
<term>Bactéries (classification)</term>
<term>Bactéries (génétique)</term>
<term>Bactéries (isolement et purification)</term>
<term>Champignons (classification)</term>
<term>Champignons (génétique)</term>
<term>Champignons (isolement et purification)</term>
<term>Espèce introduite (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Microbiote (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines bactériennes (génétique)</term>
<term>Protéines fongiques (génétique)</term>
<term>Rhizosphère (MeSH)</term>
<term>Régulation de l'expression des gènes bactériens (MeSH)</term>
<term>Régulation de l'expression des gènes fongiques (MeSH)</term>
<term>Sol (composition chimique)</term>
<term>Séquençage nucléotidique à haut débit (méthodes)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Bacterial Proteins</term>
<term>DNA, Bacterial</term>
<term>DNA, Fungal</term>
<term>DNA, Ribosomal</term>
<term>Fungal Proteins</term>
<term>RNA, Ribosomal, 16S</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteria</term>
<term>Fungi</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Bactéries</term>
<term>Champignons</term>
<term>Sol</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Acacia</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term>
<term>Fungi</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Acacia</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term>
<term>ADN fongique</term>
<term>ADN ribosomique</term>
<term>ARN ribosomique 16S</term>
<term>Bactéries</term>
<term>Champignons</term>
<term>Protéines bactériennes</term>
<term>Protéines fongiques</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteria</term>
<term>Fungi</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Bactéries</term>
<term>Champignons</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>High-Throughput Nucleotide Sequencing</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Séquençage nucléotidique à haut débit</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Gene Expression Regulation, Bacterial</term>
<term>Gene Expression Regulation, Fungal</term>
<term>Introduced Species</term>
<term>Microbiota</term>
<term>Phylogeny</term>
<term>Rhizosphere</term>
<term>Soil Microbiology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Espèce introduite</term>
<term>Microbiologie du sol</term>
<term>Microbiote</term>
<term>Phylogenèse</term>
<term>Rhizosphère</term>
<term>Régulation de l'expression des gènes bactériens</term>
<term>Régulation de l'expression des gènes fongiques</term>
</keywords>
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<front><div type="abstract" xml:lang="en">Invasiveness and the impacts of introduced plants are known to be mediated by plant-microbe interactions. Yet, the microbial communities associated with invasive plants are generally poorly understood. Here we report on the first comprehensive investigation of the bacterial and fungal communities inhabiting the rhizosphere and the surrounding bulk soil of a widespread invasive tree, Acacia dealbata. Amplicon sequencing data indicated that rhizospheric microbial communities differed significantly in structure and composition from those of the bulk soil. Two bacterial (Alphaproteobacteria and Gammaproteobacteria) and two fungal (Pezizomycetes and Agaricomycetes) classes were enriched in the rhizosphere compared with bulk soils. Changes in nutritional status, possibly induced by A. dealbata, primarily shaped rhizosphere soil communities. Despite a high degree of geographic variability in the diversity and composition of microbial communities, invasive A. dealbata populations shared a core of bacterial and fungal taxa, some of which are known to be involved in N and P cycling, while others are regarded as plant pathogens. Shotgun metagenomic analysis also showed that several functional genes related to plant growth promotion were overrepresented in the rhizospheres of A. dealbata. Overall, results suggest that rhizosphere microbes may contribute to the widespread success of this invader in novel environments.</div>
</front>
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<Abstract><AbstractText>Invasiveness and the impacts of introduced plants are known to be mediated by plant-microbe interactions. Yet, the microbial communities associated with invasive plants are generally poorly understood. Here we report on the first comprehensive investigation of the bacterial and fungal communities inhabiting the rhizosphere and the surrounding bulk soil of a widespread invasive tree, Acacia dealbata. Amplicon sequencing data indicated that rhizospheric microbial communities differed significantly in structure and composition from those of the bulk soil. Two bacterial (Alphaproteobacteria and Gammaproteobacteria) and two fungal (Pezizomycetes and Agaricomycetes) classes were enriched in the rhizosphere compared with bulk soils. Changes in nutritional status, possibly induced by A. dealbata, primarily shaped rhizosphere soil communities. Despite a high degree of geographic variability in the diversity and composition of microbial communities, invasive A. dealbata populations shared a core of bacterial and fungal taxa, some of which are known to be involved in N and P cycling, while others are regarded as plant pathogens. Shotgun metagenomic analysis also showed that several functional genes related to plant growth promotion were overrepresented in the rhizospheres of A. dealbata. Overall, results suggest that rhizosphere microbes may contribute to the widespread success of this invader in novel environments.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kamutando</LastName>
<ForeName>Casper N</ForeName>
<Initials>CN</Initials>
<AffiliationInfo><Affiliation>Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa.</Affiliation>
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   |texte=   Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata.
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	Serveur d'exploration sur les interactions arbre microorganisme
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Serveur d'exploration sur les interactions arbre microorganisme

Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata.

Soil nutritional status and biogeography influence rhizosphere microbial communities associated with the invasive tree Acacia dealbata.

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